Showing posts with label microbiome research. Show all posts
Showing posts with label microbiome research. Show all posts

Friday, March 15, 2024

FIF 2023 Research Grant to Investigate Individual Island Fox Impact


FIF awarded a second Research Grant in 2023 to Juliann Schamel, NPS biologist and graduate student in Ecology and Conservation at University of Aberdeen, Scotland...

Juliann Schamel in the field with island fox
 

and Dr. Alexandria DeCandia, biology professor at Georgetown University...

Dr. Alexandria DeCandia
 

for their project: From Microbes to Habitats: How Individual Fox Foraging Behavior Cascades Through an Ecosystem.

Schamel and De Candia are combining their respective work in stable isotope diet analysis and microbiome research to investigate the specific interconnections between 15 male island foxes and the island ecosystem. The team says, "Recent research has revealed that the island fox displays a high level of individual specialization, from their diet, to activity patterns, to the germination rate of scat-dispersed native seeds." This work builds on stable isotope diet analysis that Schamel presented at the Channel Island Symposium that demonstrated that diet specialization is occurring on Santa Rosa Island

GPS radio collar deployed on Santa Rosa Island

The 15 island foxes to be studied were part of a territory range investigation monitoring island fox movement with GPS radio collars by FIF 2021 Research Grant recipient Katie Elder. The final collection of data occurred in December 2023 when the island foxes were recaptured and their GPS collars removed.

Combining specific daily movement data (over the course of a year) with stable isotope diet data from individual whisker samples and microbiome swabs of gut microfloral offers a unique window into the lives of these individual island foxes. 

Microbiome sample swabs
 

It's easy to assume that island foxes, as a species, have a specifically defined relationship with plants and animals in the island ecosystem. However, Schamel's island fox dietary data has revealed a great deal of individualism in dietary choice, especially when resources are abundant. Some island foxes are eating beach foods, some are fruit specialists, others prey predominantly on deer mice.

Island fox whisker sample being collected
 

This investigation will try to reveal "a more holistic understanding of island foxes," DeCandia says. "[H]ost-associated microbes are critical to ... digestion and immunity,... By linking gut microbial communities with individual diet, movement, and activity patterns, we can begin to untangle the eco-evolutionary factors shaping these island hosts, their microbes, and the ecosystem in which they live."

Comparing microbiome of island fox and island spotted skunk, A. DeCandia
 

Friends of the Island Fox is proud to invest in this cutting-edge, multidisciplinary scientific investigation that brings together academic and governmental organizations and investigators. Whisker samples will be processed and analyzed by Julianne Schamel and Seth Newsome at the Center for Stable Isotopes at the University of New Mexico. DNA from microbiome swabs will be extracted by Alexandria DeCandia at the Center for Conservation Genomics at the Smithsonian's National Zoo and Conservation Biology Institute. Undergraduate researchers at Georgetown University, University of New Mexico, and California State University Channel Islands will actively participate in sample collection, laboratory preparation, data analysis and interpretation, and co-authorship of findings. 

Your donations help grow scientific knowledge and the next generation of scientists! 

Applications for FIF's 2024 Research Grant 

will be available March 22

Friday, December 10, 2021

Fox Foto Friday - This Is Island Fox Science


Fresh from the fox swabs...This past week, Friends of the Island Fox had the opportunity to spend some time in the field with the biologists of the Catalina Island Conservancy during their final days this season counting and providing island foxes with health checks.

During health checks, samples, like the one shown above, were taken. (how are island foxes swabbed?)


Soon these swabs will be boxed up and sent across the country to enrich the data set of Dr. Alexandra De Candia. During FIF's first virtual "Date with a Fox," Dr. Allie shared her work on the island fox microbiome and its importance for fox health and immunity.

Dr. Allie explains that Catalina Island biologists "have been collecting swabs since 2017, so we are building a really nice longitudinal dataset. 2020–2021 samples will help that dataset grow. This will allow us to look at changes in fox microbiomes through time and (once we have enough repeat individuals sampled) see how treatment or past history of mite infection alters microbiomes in the short- and long-term."

If you missed the virtual event you can watch the video here.

More on the connection between microbiome and fox health on Catalina Island.

Not only were the CIC biologists taking these samples to enrich the microbiome data set, they were also putting radio collars, funded by you, on island foxes.

Tuesday, October 20, 2020

FIF Research Grant to Investigate Diversity of Island Fox Microbiome


Friends of the Island Fox is happy to announce Alexandra DeCandia, Ph.D. is the recipient of FIF's 2020 Research Grant.

You may remember DeCandia's article from April 2020 regarding her doctoral work at Princeton University: Mites, Microbes, and Cancer in Santa Catalina Island Foxes. Microbes can be found on the skin, in the digestive system, and in connection with the body's openings.

A healthy animal has a diversity of microbes. In this way, a single island fox is like an island. If something should happen to the biodiversity of microbes on an individual, the ecosystem on that individual might become out of balance. Some microbes might thrive, while others perish. An imbalance of microbes can impact an animal's overall health.

When island foxes on a specific island go through a near-extinction population bottleneck, there is a potential for a loss of microbe diversity that can be passed on to surviving island foxes. 

DeCandia investigated if there was a connection between the diversity of microbes on Catalina Island foxes and an unusual prevalence of cancer in this subspecies.

Looking into island fox ear canal

What she found was "evidence of disrupted microbial communities in mite-infected ear canals that may contribute to sustained inflammation." Inflammation can play a role in cancer and this microbial imbalance may be connected to why Santa Catalina Island foxes are the only island foxes known to develop cancerous tumors in their ear canals.

DeCandia's work was published in Molecular Ecology and when she presented her findings at the Annual Island Fox Conservation Working Group Meeting in May of this year, everyone was intrigued. A healthy microbial biome is vital to healthy digestion, immune response to disease, behavior, and even development. Because island foxes on five islands have been through population bottlenecks, where the number of surviving individuals was very low, there is a potential that island foxes on other islands may have disrupted microbial communities as well.

As island foxes are counted and given health checks across the islands this year, they are also getting swabbed for microbes in their ear canals and at their anuses. DeCandia describes the process as "similar to cleaning your ears with a cotton swab, except you don't throw away the swab afterwards." The swab samples will be sent to DeCandia at the Smithsonian Conservation Biology Institute in Washington D.C.

 

 

DeCandia in the lab

FIF Research Grant funding will be used to extract DNA samples and process DNA sequencing to identify the various microbes in island fox ear canals and digestive systems. 

This investigation provides a unique opportunity to do comparative analyses between subspecies of island foxes on different islands. DeCandia hopes to:

  1. survey variation of microbes within island foxes on each island
  2. characterize the differences between islands
  3. identify the drivers of ear canal tumors on Santa Catalina Island

This work is at the cutting edge of science and may have important consequences for the long term survival of the island fox.

If you are an FIF donor, 

you are making this important work possible.

 

If you haven't donated yet, Please Donate 

This is Science, For Fox Sake!